FastQCFastQC Report
Wed 8 May 2024
EGAF00007962661

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962661
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences529662
Total Bases16.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20350.3842072869112755No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17370.3279449913340961No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9490.17917086745886998No Hit
GTCGGCGTTAAAGGTGACTCTGGCGTTAAAG9490.17917086745886998No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9080.17143008182576813No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8110.15311651581574665No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7150.134991749455313No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6210.11724458239405508No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5370.10138541182867565No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5360.10119661217908779No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5340.10081901287991209No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)