FastQCFastQC Report
Wed 8 May 2024
EGAF00007962662

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962662
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences509107
Total Bases22.4 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16880.33156094887715154No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10310.2025114563343266No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8860.1740302136878888No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8710.17108387824170557No Hit
GGTGCCAGCCGCGCCACGAGGACCACGCAGGCCCAGCGGACCAG8610.16911965461091677No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8430.16558405207549692No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG7210.1416205237798734No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5380.10567523133643811No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5220.10253247352717601No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)