FastQCFastQC Report
Wed 8 May 2024
EGAF00007962663

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962663
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences509107
Total Bases15.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43550.8554193912085278No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19490.3828271856407396No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16580.3256682779847851No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9200.18070857403257076No Hit
GTCGGCGTTAAAGGTGACTCTGGCGTTAAAG8780.17245883478325774No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8270.1624412942662348No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6810.13376362925671814No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5400.10606807606259587No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5190.10194320643793937No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)