FastQCFastQC Report
Wed 8 May 2024
EGAF00007962664

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962664
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences528852
Total Bases23.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17560.3320399658127416No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10510.19873234855876504No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8950.16923449282597022No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8920.16866722636957032No Hit
GGTGCCAGCCGCGCCACGAGGACCACGCAGGCCCAGCGGACCAG8690.1643181835371711No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7870.1488129003955738No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG7520.142194791737575No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5650.10683518262198119No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5440.10286431742718188No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)