FastQCFastQC Report
Wed 8 May 2024
EGAF00007962665

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962665
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences528852
Total Bases16.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19200.36305053209593613No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17550.3318508769939416No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9770.18473977596756747No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9520.1800125554975683No Hit
GTCGGCGTTAAAGGTGACTCTGGCGTTAAAG9120.17244900274556965No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8910.16847813755077035No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7240.1369003048111759No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5940.11231875836718024No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5590.1057006497091814No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5550.10494429443398154No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5550.10494429443398154No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)