FastQCFastQC Report
Wed 8 May 2024
EGAF00007962666

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962666
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513938
Total Bases22.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17530.34109172701765583No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10350.20138615942000784No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9090.1768695834906156No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8630.16791908751639303No Hit
GGTGCCAGCCGCGCCACGAGGACCACGCAGGCCCAGCGGACCAG8560.1665570555203157No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8150.1585794395432912No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG7280.14165132759204418No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5540.10779510368955009No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5490.106822223692352No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)