FastQCFastQC Report
Wed 8 May 2024
EGAF00007962667

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962667
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513938
Total Bases15.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42270.8224727496312786No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21710.4224244947834174No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17280.3362273270316653No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9430.1834851674715627No Hit
GTCGGCGTTAAAGGTGACTCTGGCGTTAAAG8540.16616790352143643No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8340.162276383532644No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6950.13523031961053666No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5620.10935171168506706No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5610.10915713568562745No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5350.10409815970019731No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5240.10195782370636147No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)