FastQCFastQC Report
Wed 8 May 2024
EGAF00007962669

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962669
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences565073
Total Bases17.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT51100.9043079389742563No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC34420.6091248387376499No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC32460.5744390547769934No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG30440.5386914611032556No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG29120.5153316474154667No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA23260.4116282321045246No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC20470.36225408044624324No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG20060.3549983807401875No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT19020.336593679046778No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA15930.2819104788230901No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT15680.2774862716852513No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15000.26545242827032967No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13440.23784537573021536No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC13130.23235935887929524No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG12710.22492669088772602No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC11980.21200800604523665No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11680.20669895747983005No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC10300.1822773340789597No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC9860.17449072951636338No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC9670.17112833209160586No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8940.1582096472491165No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8710.15413937668230476No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8060.14263643812392382No Hit
GCCGGTGATTCCCCAACTCCGGGCCCGTCCA7980.1412206918398154No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7730.13679648470197656No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7480.13237227756413775No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7260.12847897528283958No Hit
CGTGACAAAACCGGCAGCTCTGCTCAGAAAT7180.12706322899873113No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA6920.12246205357537875No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC6890.1219311487188381No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6850.12122327557678389No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC6710.11874571957959414No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6640.11750694158099927No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA6170.10918943216186228No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCTG6020.10653490787915898No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5670.10034101788618463No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)