FastQCFastQC Report
Wed 8 May 2024
EGAF00007962671

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962671
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences540744
Total Bases16.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT47730.8826727619723936No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42390.7839199325373929No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC32340.5980648883760152No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC30120.5570103413075319No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG27340.5055996922758274No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG26940.49820247658781236No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA20880.38613465891438464No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC18970.35081295400411283No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18170.3360185226280828No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17630.3260322814492625No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA15170.28053940496797003No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT14480.2677792079061441No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13180.2437382569200953No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12620.23338215495687423No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12500.2311629902504697No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG12080.22339591377805393No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11940.22080688828724865No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10870.2010193363218085No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC9850.18215643631737016No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC9350.17290991670735134No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC8540.15793055493912092No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8510.1573757637625198No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT8060.1490538961135029No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7820.14461556670069386No Hit
GCCGGTGATTCCCCAACTCCGGGCCCGTCCA7170.13259509120766944No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7020.1298211353246638No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC6910.12778690101045967No Hit
CGTGACAAAACCGGCAGCTCTGCTCAGAAAT6860.12686224904945778No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC6590.12186912846004765No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6540.12094447649904576No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA6360.11761572943943899No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA6320.1168760078706375No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6240.11539656473303447No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6180.11428698237983222No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCTG5850.10818427943721984No Hit
CACACCCCTCCGATGCCGTCTATCGGTCTGG5620.10393088041661118No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5560.10282129806340892No Hit
AGCCGCGTGCTGTCTGAACAGAGCTACAACA5420.10023227257260367No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)