FastQCFastQC Report
Sun 21 May 2023
EGAF00007962672

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962672
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences564978
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG29270.5180732701096326No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC26050.46107990045630093No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA24700.4371851647320781No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA21380.3784218146547299No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA21340.3777138224851233No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG19690.34850914548885087No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT18840.3334643118847106No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG17700.31328653505092235No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA16640.2945247425563473No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG15830.2801879011218136No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG15550.27523195593456734No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG14180.25098322412554114No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13020.23045145120694963No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12810.226734492316515No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA12610.22319453146848195No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT12510.22142455104446546No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA12230.21646860585721922No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG11850.2097426802459565No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG9610.17009511874798666No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT9270.16407718530633053No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG9180.16248420292471566No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7580.13416451614045147No Hit
GAAACCGAACGGAATGCGTTTGCCTTCTACGTTCTGCTGGCCAA7550.13363352201324652No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG7430.13150954550442673No Hit
GGTTGCCAGCGGACCAATGATAGTCGGCGGGGTTTTCGGACGGC6530.11557972168827814No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6470.11451773343386822No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6450.11416373734906493No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6430.11380974126426163No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6310.1116857647554418No Hit
ATAATCCCAAGATTCGTCCAGGTCCGCCGGGTCGATGGACGGTG6310.1116857647554418No Hit
AGCGGTGTGGGTGATGAAGATAACGTCCGCACCGTCCTTTACGG6270.11097777258583522No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGCTAG6140.10867679803461373No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG5920.10478284110177741No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5860.10372085284736751No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)