FastQCFastQC Report
Wed 8 May 2024
EGAF00007962673

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962673
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences564978
Total Bases17.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT48210.8533075624183597No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC34200.6053333050136466No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC32420.5738276534661526No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG29310.5187812622792393No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG28930.5120553366679764No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA23050.40798048773580564No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC20200.3575360456513351No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG19350.34249121204719474No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT18820.33311031579990724No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA16830.2978877053619787No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14360.25416918888877094No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT14130.2500982339135329No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG13490.23877035919982725No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC13200.2336374159701794No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12890.22815047665572818No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC12160.21522961956040765No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11880.21027367437316144No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC10010.1771750404440527No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC9710.17186509917200316No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC9710.17186509917200316No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC9300.16460817943353545No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9130.16159921271270739No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8650.15310330667742814No Hit
CGTGACAAAACCGGCAGCTCTGCTCAGAAAT7720.1366424887340746No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7350.13009356116521353No Hit
GCCGGTGATTCCCCAACTCCGGGCCCGTCCA7340.12991656312281186No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7320.12956256703800856No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7000.12389862968115573No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC6770.11982767470591776No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6740.11929668057871279No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA6640.1175267001546963No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6620.117172704069893No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA6470.11451773343386822No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC6420.11363274322185996No Hit
AGCCGCGTGCTGTCTGAACAGAGCTACAACA6130.10849979999221208No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCTG5800.1026588645929576No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5670.10035789004173613No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)