FastQCFastQC Report
Wed 8 May 2024
EGAF00007962675

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962675
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences546073
Total Bases16.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT51310.9396179631660968No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44750.8194875044179074No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC32590.5968066540554101No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC30580.5599983884938461No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG29410.5385726816744281No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG27720.5076244384908245No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA21570.395002133414397No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT18450.3378669152292825No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18410.33713441243203746No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC18200.3332887727465009No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA15860.29043735910766505No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT14320.2622360014137304No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14080.25784098463026006No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC13390.24520531137778284No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12860.23549964931428585No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC12000.21975083917351712No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11740.2149895709914242No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11640.21315831399831156No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC10430.1910001043816486No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC9130.16719376347118425No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8870.1624324952890914No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC8720.15968560979942242No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8370.15327621032352817No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7560.13844302867931577No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7260.13294925769997784No Hit
CGTGACAAAACCGGCAGCTCTGCTCAGAAAT7090.12983612081168633No Hit
GCCGGTGATTCCCCAACTCCGGGCCCGTCCA7000.128187989517885No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC6880.1259904811261498No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6850.125441104028216No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC6850.125441104028216No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6690.12251109283923578No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA6580.12049671014681188No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6350.1162848190626528No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA5760.10548040280328821No Hit
AGCCGCGTGCTGTCTGAACAGAGCTACAACA5750.10529727710397695No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)