FastQCFastQC Report
Wed 8 May 2024
EGAF00007962676

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962676
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences537863
Total Bases23.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG23740.4413763356096255No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG22200.41274450928954026No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG21990.40884016933680134No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21240.39489609807701964No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14430.2682839310382012No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14320.2662388005867665No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12740.2368632904661596No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12280.22831092676016013No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG10310.19168449958446668No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT10120.18815200153198863No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9920.18443358252938016No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9870.18350397777872804No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC9410.17495161407272855No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9090.169002143668555No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8510.15821872856099042No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA8240.153198862907469No Hit
GCGCACACGGGAACAATCGATGGAAGCGCTGATAGTGTACGGGA6960.1294009812907748No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC6740.12531072038790547No Hit
GCCGTTATAAACACGATCACCGGTTTCCAGCGGCAGAATAGCGT6470.12029085473438403No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6460.1201049337842536No Hit
GACGTTCTCTTCTTCGTCGGAGTCCTTCAGGTGACGGTAACCGT6450.11991901283412319No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG6210.11545691003099304No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6180.11489914718060175No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6030.1121103329286454No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5900.10969336057694988No Hit
GACTTCCGCACCATATTTTGCCAGGTGGTTATCCAGGAAGTCGA5750.10690454632499354No Hit
ACAATCGATGGACGCGGAGATGGTGTACGGTACAGAAACACCGC5740.10671862537486312No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5720.10634678347460227No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5510.10244244352186338No Hit
CGTACTCCTGGCGACAGAGAAAATGGCGGTGACGTTATTTAAAT5400.10039731307042872No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)