FastQCFastQC Report
Wed 8 May 2024
EGAF00007962677

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962677
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences537863
Total Bases16.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29600.5503260123860537No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG24810.46126987727358076No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG21840.406051355084845No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG21310.3961975447279326No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21150.39322280952584576No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19530.3631036156047172No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13820.25694275308024533No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA12470.23184342481263817No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA11870.22068816780481276No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT11440.21269356694920455No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG11070.20581449179437888No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10630.19763396998864025No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9930.18461950347951056No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG9630.17904187497559787No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9470.1760671397735111No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9090.169002143668555No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9050.1682584598680333No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8950.1663992503667291No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG8080.15022412770538224No Hit
GCGCGCACCACCGCGGACCGTCGTACCGCGT7060.131260190792079No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT7030.13070242794168777No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7010.1303305860414269No Hit
GGTGAGGTGGGTAAAGACGGCACTCAGCTGG7010.1303305860414269No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6940.12902913939051394No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6780.12605440418842717No Hit
CGCCTGGACGCAGAACAGCGCGCCCAGCAGA6750.1254966413380359No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA6440.11973309188399277No Hit
ACTGATCTGCGTACCCACATGGCTCGCAAAG6410.11917532903360151No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA6300.11713019858216682No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5920.11006520247721074No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA5900.10969336057694988No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5890.10950743962681946No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5880.10932151867668904No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5850.10876375582629777No Hit
CTGAAAAGCGCAGCCCGTACCACTGCGGACC5760.10709046727512396No Hit
CACACCCCTCCGATGCCGTCTATCGGTCTGG5680.10560309967408057No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5540.10300020637225464No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)