FastQCFastQC Report
Wed 8 May 2024
EGAF00007962678

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962678
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513370
Total Bases22.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG22390.4361376784775113No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG20860.40633461246274616No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG20630.4018544129964743No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19520.38023258078968386No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14620.28478485302997836No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13320.2594619864814851No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12130.23628182402555664No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11160.2173870697547578No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT9900.19284336833083351No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9490.184856925804001No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG9160.17842881352630657No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9020.175701735590315No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC8840.17219549252975436No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA7980.15544344235152036No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7690.1497944951983949No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7540.14687262598126108No Hit
GCGCACACGGGAACAATCGATGGAAGCGCTGATAGTGTACGGGA7070.13771743576757506No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6500.12661433274246645No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6270.12213413327619455No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC6190.1205758030270565No Hit
GACGTTCTCTTCTTCGTCGGAGTCCTTCAGGTGACGGTAACCGT5900.11492685587393109No Hit
ACCCGGAGACTGCGGCAGCGTATCACGGGTGCCGTCGCCACCCT5780.11258936050022401No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5770.11239456921908175No Hit
GACTTCCGCACCATATTTTGCCAGGTGGTTATCCAGGAAGTCGA5720.11142061281337048No Hit
GCCGTTATAAACACGATCACCGGTTTCCAGCGGCAGAATAGCGT5630.10966749128309017No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5610.10927790872080566No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5470.10655083078481409No Hit
TGCATCTTCGAAGTCTTCATCATCGTCGTCGTCTTCTTCTTCAC5450.10616124822252956No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG5250.10226542259968444No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5230.10187584003739991No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)