FastQCFastQC Report
Wed 8 May 2024
EGAF00007962679

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962679
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513370
Total Bases15.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42600.8298108576660109No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26170.5097687827492842No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG23940.46633032705456107No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG20030.3901669361279389No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG19480.3794534156651148No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19140.3728305121062781No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18820.36659719110972594No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13030.2538130393283597No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA11820.23024329431014667No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA11450.2230360169078832No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10550.20550480160508017No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT10450.2035568887936576No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG9960.19401211601768703No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8840.17219549252975436No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG8810.17161111868632759No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8350.1626507197537838No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8340.16245592847264156No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7770.15135282544753295No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG7670.1494049126361104No Hit
GCGCGCACCACCGCGGACCGTCGTACCGCGT7090.13810701832985955No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7050.13732785320529053No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6780.13206848861444961No Hit
CGTATGCCGACTACTAGCACCGCTTCCCAGA6720.1308997409275961No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT6590.12836745427274676No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA6340.12349767224419034No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6260.1219393419950523No Hit
ACTGATCTGCGTACCCACATGGCTCGCAAAG6210.12096538558934102No Hit
CGCCTGGACGCAGAACAGCGCGCCCAGCAGA6140.11960184662134522No Hit
GGTGAGGTGGGTAAAGACGGCACTCAGCTGG5740.111810195375655No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5710.11122582153222822No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA5690.11083623896994371No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA5510.10732999590938311No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5500.10713520462824085No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5500.10713520462824085No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5340.10401854412996474No Hit
CTGAAAAGCGCAGCCCGTACCACTGCGGACC5230.10187584003739991No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)