FastQCFastQC Report
Wed 8 May 2024
EGAF00007962680

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962680
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences536135
Total Bases23.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG23470.43776287688735116No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG21540.401764480960952No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG21150.39449019370121335No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20710.3862833055107389No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14770.2754903149393343No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13950.26019565967526836No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12750.23781323733761084No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12300.22941982896098928No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT10290.191929271545413No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9880.18428194391338001No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG9570.1784998181428185No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC9520.1775672172120828No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9260.172717692372257No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8310.15499827468827815No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA7980.14884310854542232No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7940.14809702780083372No Hit
GCGCACACGGGAACAATCGATGGAAGCGCTGATAGTGTACGGGA7860.14660486631165656No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6740.12571460546317625No Hit
GACGTTCTCTTCTTCGTCGGAGTCCTTCAGGTGACGGTAACCGT6530.1217976815540862No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC6480.12086508062335045No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6130.11433687410820036No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6070.11321775299131748No Hit
ACCCGGAGACTGCGGCAGCGTATCACGGGTGCCGTCGCCACCCT5960.11116603094369888No Hit
GCCGTTATAAACACGATCACCGGTTTCCAGCGGCAGAATAGCGT5940.1107929905714046No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5900.110046909826816No Hit
ACAATCGATGGACGCGGAGATGGTGTACGGTACAGAAACACCGC5840.10892778870993314No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG5640.10519738498699022No Hit
GACTTCCGCACCATATTTTGCCAGGTGGTTATCCAGGAAGTCGA5540.10333218312551876No Hit
CGTACTCCTGGCGACAGAGAAAATGGCGGTGACGTTATTTAAAT5380.10034786014716443No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)