FastQCFastQC Report
Wed 8 May 2024
EGAF00007962681

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962681
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences536135
Total Bases16.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28570.5328881718223955No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG24850.4635026625756573No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG20910.3900137092336818No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20810.38814850737221035No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG20310.3788224980648531No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19650.3665121657791415No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13670.2549730944631483No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA12640.23576151528999229No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA12140.22643550598263495No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT11170.20834304792636182No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10780.20106876066662313No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG10560.19696531657138594No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG9490.17700765665364135No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9390.1751424547921699No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9330.174023333675287No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9270.17290421255840413No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9060.16898728864931406No Hit
GCGCGCACCACCGCGGACCGTCGTACCGCGT8060.15033527003459948No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7970.14865658835927517No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG7960.14847006817312805No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7340.136905816632005No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6910.12888544862767773No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT6790.126647206393912No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6610.12328984304326336No Hit
CGCCTGGACGCAGAACAGCGCGCCCAGCAGA6600.12310332285711621No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA6410.11955943932032045No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA6370.11881335857573186No Hit
GGTGAGGTGGGTAAAGACGGCACTCAGCTGG6190.11545599522508324No Hit
ACTGATCTGCGTACCCACATGGCTCGCAAAG6180.11526947503893607No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6110.11396383373590607No Hit
CTGAAAAGCGCAGCCCGTACCACTGCGGACC6040.11265819243287604No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6000.11191211168828748No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA5930.11060647038525745No Hit
CACACCCCTCCGATGCCGTCTATCGGTCTGG5600.10445130424240164No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5580.10407826387010735No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5490.10239958219478303No Hit
AACGCTCAGAGCGACATCAAAGCAAACACTG5420.101093940891753No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)