FastQCFastQC Report
Wed 8 May 2024
EGAF00007962682

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962682
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences520264
Total Bases22.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG23850.45842110928297936No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21280.4090231113434718No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG21050.4046022788430489No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG20090.3861501084065013No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13950.2681331016560823No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13670.2627512186120892No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12330.23699506404440823No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12100.23257423154398535No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT9800.18836590653975674No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9630.1850983346916181No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG9560.18375286393061985No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC8890.17087478664677933No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8790.16895268555963897No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA7960.15299924653637384No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7860.15107714544923345No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7790.1497316746882352No Hit
GCGCACACGGGAACAATCGATGGAAGCGCTGATAGTGTACGGGA7090.1362769670782526No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6560.12608983131640858No Hit
GCCGTTATAAACACGATCACCGGTTTCCAGCGGCAGAATAGCGT6400.123014469576984No Hit
GACGTTCTCTTCTTCGTCGGAGTCCTTCAGGTGACGGTAACCGT6320.1214767887072717No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC6170.11859363707656112No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6130.11782479664170498No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5920.11378838435871019No Hit
ACCCGGAGACTGCGGCAGCGTATCACGGGTGCCGTCGCCACCCT5690.10936755185828734No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG5600.107637660879861No Hit
GACTTCCGCACCATATTTTGCCAGGTGGTTATCCAGGAAGTCGA5570.10706103055371889No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5390.1036012485968662No Hit
ACAATCGATGGACGCGGAGATGGTGTACGGTACAGAAACACCGC5280.10148693740101178No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5280.10148693740101178No Hit
CGGTTTATCTTTCTCGACGTCTTCCGCCAGCGGGAATGCCGGGC5210.10014146664001353No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)