FastQCFastQC Report
Wed 8 May 2024
EGAF00007962683

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962683
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences520264
Total Bases16.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40430.7771054695308536No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30720.5904694539695231No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG25060.4816785324373779No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20790.3996048160164839No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG19860.38172927590607847No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG19570.37615518275337134No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18470.3550120707948272No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13040.2506419817631049No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA11870.22815339904356252No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA11280.2168130026294343No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT10970.21085448925929912No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10770.2070102870850184No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG10410.20009072317131302No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9530.18317623360447774No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG8900.17106699675549336No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8790.16895268555963897No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8290.15934218012393708No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG7990.15357587686251595No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7760.1491550443620931No Hit
GCGCGCACCACCGCGGACCGTCGTACCGCGT7260.13954453892639124No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7020.13493149631725432No Hit
CGTATGCCGACTACTAGCACCGCTTCCCAGA6900.13262497501268586No Hit
GGTGAGGTGGGTAAAGACGGCACTCAGCTGG6570.12628204142512262No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6340.12186120892469976No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA6280.12070794827241553No Hit
CGCCTGGACGCAGAACAGCGCGCCCAGCAGA6240.1199391078375594No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA6200.11917026740270326No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT6190.1189780572939892No Hit
ACTGATCTGCGTACCCACATGGCTCGCAAAG6130.11782479664170498No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6090.11705595620684883No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA5770.11090523272799964No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5770.11090523272799964No Hit
CACACCCCTCCGATGCCGTCTATCGGTCTGG5440.1045622991404364No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5360.1030246182707241No Hit
CTGAAAAGCGCAGCCCGTACCACTGCGGACC5310.1020635677271539No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5300.10187135761843986No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5280.10148693740101178No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5230.10052588685744161No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)