FastQCFastQC Report
Wed 8 May 2024
EGAF00007962685

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962685
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences547488
Total Bases16.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21910.40019141972061484No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9530.17406774212402829No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9170.1674922555380209No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9050.16530042667601846No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC8870.16201268338301478No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT8560.1563504588228418No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT6990.12767403121164297No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5840.10666900461745281No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5830.10648635221228593No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)