FastQCFastQC Report
Wed 8 May 2024
EGAF00007962687

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962687
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences522598
Total Bases16.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43590.8341019292075362No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21150.40470878189353954No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8740.1672413595153445No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC8510.16284027110704596No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8280.1584391826987474No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT8070.15442079763030092No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT7040.13471157562792052No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5270.10084233005101435No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5230.10007692337131026No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)