FastQCFastQC Report
Wed 8 May 2024
EGAF00007962689

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962689
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences546498
Total Bases16.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21180.3875586003974397No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9560.17493202170913708No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC9230.16889357326101834No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9140.16724672368425866No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8840.16175722509505983No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT8020.14675259561791626No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT7700.14089713045610414No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG6070.11107085478812365No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5800.10613030605784468No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)