FastQCFastQC Report
Wed 8 May 2024
EGAF00007962691

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962691
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences528755
Total Bases16.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40870.7729477735435126No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22830.43176896672371895No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8910.16850904483172738No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8740.16529394521092No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC8190.1548921523200726No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT7640.14449035942922525No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT7500.14184263032973682No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5340.10099195279477263No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)