FastQCFastQC Report
Wed 8 May 2024
EGAF00007962694

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962694
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447969
Total Bases18.3 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA6700.14956392071772823No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6190.13817920436458772No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5760.12858032587076337No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)