FastQCFastQC Report
Wed 8 May 2024
EGAF00007962698

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962698
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492862
Total Bases20.2 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG19600.3976772402822697No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT15260.30962013707691No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT15200.30840275776992343No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT14480.293794206086085No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT14240.2889246888581388No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC12710.25788151652998204No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC11410.231504964878607No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT11330.22988179246929158No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT9880.2004617925504502No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA9830.1994473097946281No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG8330.16901282711996463No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT7500.1521724133733175No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT7440.15095503406633093No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT7390.14994055131050882No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG6130.1243755858637915No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTT6040.12254951690331167No Hit
ACCCTCACCGGAACGAGCCGGACGAGAACCTTCACGGTGAC5510.11179599969159724No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTA5280.1071293790148155No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCT5280.1071293790148155No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT5140.10428882729851359No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCT5060.1026656548891982No Hit
GTCTTCCGGGCCTTCCTCACCCGGGCGACGGTGCGCGCGGT5000.10144827558221166No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGC4990.10124537903104724No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)