FastQCFastQC Report
Wed 8 May 2024
EGAF00007962699

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962699
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492862
Total Bases16.2 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT26170.5309802743972958No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT25620.5198209640832525No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG21030.42669144709878215No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC16040.32544606806773496No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT15940.32341710255609074No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC15630.3171273094699936No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG15330.31104041293506096No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC11840.2402295165786772No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC11680.2369831717600464No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT10780.21872248215524834No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT10050.2039110339202454No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA8710.1767228960642127No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC7670.15562165474311268No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC6920.14040441340578091No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGAGC6180.1253900686196136No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGAGC6090.12356399965913378No Hit
CGTCACGCACATCGCCAGGGTGTAGGCGGCAGC5980.12133213759632515No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAATCT5720.11605682726605013No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5520.11199889624276167No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT5490.1113902065892684No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGTCC5470.11098441348693953No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA5400.10956413762878858No Hit
GGCGAAGCTGAACGTGGCAAAGCCGGTGATCCA5090.10327434454269145No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC5080.10307144799152704No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)