FastQCFastQC Report
Wed 8 May 2024
EGAF00007962700

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962700
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476549
Total Bases19.5 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG18930.3972309248366905No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT14320.30049375824941404No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT14290.2998642322195619No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT14200.29797565413000554No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT13230.27762097916478684No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC12380.25978440831897665No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC11040.23166557898558174No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT10430.21886521637858855No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT10040.21068137799051095No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA9330.19578259528401065No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG8410.17647713036854554No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT7830.16430629379140443No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT6500.13639730646796028No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT6260.1313610982291433No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG6010.12611504798037557No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTT5410.11352452738333307No Hit
ACCCTCACCGGAACGAGCCGGACGAGAACCTTCACGGTGAC5350.11226547532362885No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT5310.111426107283826No Hit
GTCTTCCGGGCCTTCCTCACCCGGGCGACGGTGCGCGCGGT5020.10534068899525548No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA4980.10450132095545263No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTA4950.10387179492560052No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)