FastQCFastQC Report
Wed 8 May 2024
EGAF00007962701

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962701
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476549
Total Bases15.7 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT24870.5218770787474111No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT24360.5111751362399249No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23060.4838956749463329No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG20580.43185485647855726No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT15480.32483543140369614No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG14660.3076283865877381No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC14320.30049375824941404No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC14220.29839533814990693No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC11570.24278720551296926No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT10810.22683921275671545No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC10800.22662937074676479No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT10100.21194043005021518No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA7910.16598502987101013No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC6390.13408904435850247No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGAGC5930.12443631190076991No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC5850.12275757582116424No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGAGC5550.11646231552264301No Hit
CGTCACGCACATCGCCAGGGTGTAGGCGGCAGC5530.11604263150274158No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC5320.11163594929377671No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGTCC5190.1089080031644175No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT5110.10722926708481184No Hit
GGCGAAGCTGAACGTGGCAAAGCCGGTGATCCA5080.10659974105495973No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAATCT4970.10429147894550195No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA4890.10261274286589626No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)