FastQCFastQC Report
Wed 8 May 2024
EGAF00007962702

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962702
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences496063
Total Bases20.3 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG19780.3987396762104813No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT15330.30903332842804243No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT14980.3019777729844798No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT14510.29250316996026715No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT14390.2900841223796171No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC12710.25621745625051656No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC11420.23021269475852865No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT11030.222350790121416No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT10370.2090460284278408No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA9690.1953380921374906No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG8330.16792221955679018No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT7870.15864920383096504No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT7440.14998095000030237No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT7110.14332856915351477No Hit
ACCCTCACCGGAACGAGCCGGACGAGAACCTTCACGGTGAC5820.11732380766152686No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG5700.11490476008087683No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCT5700.11490476008087683No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTT5620.1132920616937768No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT5350.10784920463731422No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT5270.10623650625021419No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTA5250.10583333165343918No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAA5110.10301110947601413No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCT5030.1013984110889141No Hit
GTCTTCCGGGCCTTCCTCACCCGGGCGACGGTGCGCGCGGT5020.10119682379052661No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)