FastQCFastQC Report
Wed 8 May 2024
EGAF00007962703

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962703
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences496063
Total Bases16.3 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT26520.5346095153236585No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT25440.5128380870978081No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG22280.4491365008073571No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC16380.33019999475873024No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT15910.3207253917345176No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG15860.3197174552425801No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC15600.314476185484505No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC11520.2322285677424037No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT11150.22476983770206604No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC10980.2213428536294785No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT10360.20884444112945333No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA9220.18586348911327794No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC7250.14615079133093983No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC6530.1316365058470396No Hit
CGTCACGCACATCGCCAGGGTGTAGGCGGCAGC6360.12820952177445202No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGAGC6270.1263952360889645No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5730.11550952197603934No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGAGC5710.11510634737926433No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGTCC5600.11288888709700179No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA5550.11188095060506427No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT5470.11026825221796424No Hit
GGCGAAGCTGAACGTGGCAAAGCCGGTGATCCA5290.1066396808469892No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC5280.1064380935486017No Hit
GACGCTAACGGCAACAACCTGACTTTCGAACAC5200.10482539516150166No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAATCT5110.10301110947601413No Hit
GATGGCGAACACCGTCGTCACCGTGCCCACCGT4980.10039047459697659No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)