FastQCFastQC Report
Wed 8 May 2024
EGAF00007962705

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962705
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480273
Total Bases15.8 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT25090.5224112119565331No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT24550.5111676067569902No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22840.4755628569584382No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG21760.4530756465593527No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT15560.3239824016757136No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG15410.32085917800917396No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC15000.31232236665396557No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC14840.3089909280763233No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC10650.22174888032431553No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT10570.2200831610354944No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC10140.21112991985808072No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT9840.2048834725250014No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA8430.17552517005952864No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC7290.15178867019382727No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC6270.1305507492613576No Hit
CGTCACGCACATCGCCAGGGTGTAGGCGGCAGC6070.12638645103930474No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGAGC5960.12409608701717564No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT5910.12305501246166242No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGAGC5430.11306069672873553No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC5360.11160319235101702No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAATCT5310.1105621177955038No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGTCC5300.11035390288440115No Hit
GGCGAAGCTGAACGTGGCAAAGCCGGTGATCCA5180.10785532395116944No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC5150.10723067921786152No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCCAG4860.10119244679588484No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)