FastQCFastQC Report
Wed 8 May 2024
EGAF00007962707

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962707
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493930
Total Bases16.2 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG9580.1939546089526856No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6680.1352418358876764No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5710.11560342558662158No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)