FastQCFastQC Report
Wed 8 May 2024
EGAF00007962714

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962714
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475619
Total Bases19.5 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA8360.17577094270834429No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8080.16988387764155763No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG7450.15663798124128767No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6980.14675612202203864No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC6680.14044855230762437No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTT6150.1293051791454925No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5680.1194233199262435No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5250.1103824700022497No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT5170.10870045141173923No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)