FastQCFastQC Report
Wed 8 May 2024
EGAF00007962715

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962715
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475619
Total Bases15.6 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG18000.3784541828648561No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT9400.1976371843849804No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7900.1660993358129091No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT7040.1480176359649215No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC6310.13266921632651343No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCCAG6230.13098719773600298No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5920.1244693756977749No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5790.12173609548819539No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG5360.1126952455642016No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT5060.10638767584978732No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5040.10596717120215972No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT4960.10428515261164924No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC4830.10155187240206973No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)