FastQCFastQC Report
Wed 8 May 2024
EGAF00007962716

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962716
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454127
Total Bases18.6 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7880.17351974227473813No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7680.16911568790228285No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG7130.1570045383780308No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG6750.1486368350703658No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTT6030.13278223932952676No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5730.12617615777084382No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT5200.11450541368383735No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC5180.11406500824659183No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT4830.10635791309479506No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)