FastQCFastQC Report
Wed 8 May 2024
EGAF00007962717

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962717
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences454127
Total Bases14.9 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22330.49171267068463226No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG17700.3897588119622925No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT8860.195099608699769No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7600.16735406615330073No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCCAG6130.1349842665157544No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5910.1301398067060536No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT5420.11934987349353815No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG5330.11736804902593327No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5250.11560642727695117No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC4920.10833973756239994No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC4770.10503669678305848No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT4700.10349527775269914No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)