FastQCFastQC Report
Wed 8 May 2024
EGAF00007962718

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962718
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476105
Total Bases19.5 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8740.1835729513447664No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA8070.16950042532634607No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG7910.1661398220980666No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG7290.15311748458848362No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTT6410.13463416683294652No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC5820.12224194242866594No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5700.11972149000745633No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT5340.11216013274382751No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5040.10585900169080349No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT4910.10312851156782643No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)