FastQCFastQC Report
Wed 8 May 2024
EGAF00007962719

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962719
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476105
Total Bases15.7 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG19010.39928167105995527No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT9470.1989057035737915No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC8710.18294283823946397No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCCAG6580.13820480776299346No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG6300.13232375211350436No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT6170.12959326199052731No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5910.12413228174457315No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5710.11993152770922381No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG5300.11131998193675764No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT5280.11089990653322271No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5050.10606903939257098No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)