FastQCFastQC Report
Wed 8 May 2024
EGAF00007962720

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962720
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459890
Total Bases18.8 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA8220.17873839396377394No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7970.17330231142229663No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG7080.15394985757463742No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG6530.14199047598338735No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTT6230.13546717693361457No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC5600.12176824892909173No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT5330.11589727978429623No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT4990.1085042075278871No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG4940.10741699101959165No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT4860.10567744460631891No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)