FastQCFastQC Report
Wed 8 May 2024
EGAF00007962730

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962730
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503793
Total Bases20.6 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA11340.22509244868428105No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG9870.19591379792891125No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA9150.18162221388546487No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8970.17804931787460326No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG8650.17169750274418263No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT8320.16514719339093636No Hit
AACTTCGTGCAGGATAGAGGCCTTAGCGGACGGAATGGTAC6990.13874746175512562No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG6820.13537305996708965No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAG6550.13001371595079725No Hit
CATGCATTTTGGGCGGCCCAGGGCAACGTCCAGATCAGTGC5770.11453116657039696No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC5510.10937031677693021No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5160.10242301897803266No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT5140.10202603053238136No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)