FastQCFastQC Report
Wed 8 May 2024
EGAF00007962731

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962731
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503793
Total Bases16.6 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG24450.4853183748087012No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG8940.17745383520612631No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC8910.1768583525376494No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC8800.1746749160865673No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG8700.17268997385831086No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT8600.1707050316300544No Hit
ACCACTCCGACGAAAAGCCACTTCGCAAACCTG7320.1452977711083719No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCGCA6930.13755649641817175No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6200.12306641815189968No Hit
ACCCAGGGCGAAGTAAACGTGACGGGTGTTATC5940.11790556835843294No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT5780.11472966079322261No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5720.11353869545626875No Hit
CCGACCAAGTCTCACTTCGCCAACCTGAAGGGT5170.10262151320085829No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5150.10222452475520699No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)