FastQCFastQC Report
Wed 8 May 2024
EGAF00007962732

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962732
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488953
Total Bases20 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA10730.21944849504962646No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG9300.19020233028532396No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA8430.17240920906508397No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8260.16893239227492213No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG7660.15666127419199802No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7630.1560477182878518No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG6950.14214045112720444No Hit
AACTTCGTGCAGGATAGAGGCCTTAGCGGACGGAATGGTAC6920.14152689522305825No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAG6070.12414281127224908No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC5390.11023554411160173No Hit
CATGCATTTTGGGCGGCCCAGGGCAACGTCCAGATCAGTGC5260.1075768018603015No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT5220.10675872732143989No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5120.10471354097428588No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)