FastQCFastQC Report
Wed 8 May 2024
EGAF00007962733

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962733
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488953
Total Bases16.1 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24240.4957531705501347No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG23730.48532272017964917No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG8490.17363632087337638No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT8400.17179565316093776No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC8070.1650465382153295No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG7660.15666127419199802No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC7540.15420705057541317No Hit
ACCACTCCGACGAAAAGCCACTTCGCAAACCTG7120.1456172679173663No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCGCA6320.12925577714013411No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT5570.11391687953647897No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5510.11268976772818655No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5190.10614517141729368No Hit
ACCCAGGGCGAAGTAAACGTGACGGGTGTTATC5170.10573613414786287No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)