FastQCFastQC Report
Wed 8 May 2024
EGAF00007962734

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962734
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506717
Total Bases20.7 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA11210.22122802274247758No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG9830.19399388613368013No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9330.18412644533339123No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG8640.17050937702899252No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA8470.1671544471568943No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7870.1553135181965476No Hit
AACTTCGTGCAGGATAGAGGCCTTAGCGGACGGAATGGTAC6640.13103961382783685No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG6510.1284740792197617No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAG6240.12314566118760571No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5820.11485701091536302No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC5630.11110738341125323No Hit
CATGCATTTTGGGCGGCCCAGGGCAACGTCCAGATCAGTGC5260.10380547721903942No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)