FastQCFastQC Report
Wed 8 May 2024
EGAF00007962735

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962735
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506717
Total Bases16.7 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG25420.5016606902866886No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9460.18669197994146636No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC8800.17366695808508498No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG8620.17011467939698097No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT8260.16301012202077295No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG7950.1568923087245938No Hit
ACCACTCCGACGAAAAGCCACTTCGCAAACCTG6880.13577598541197552No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCGCA6670.13163166027585418No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC6390.12610589342769238No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT5890.11623845262740345No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5790.11426496446734567No Hit
ACCCAGGGCGAAGTAAACGTGACGGGTGTTATC5370.10597631419510299No Hit
CCGACCAAGTCTCACTTCGCCAACCTGAAGGGT5220.10301608195501633No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)