FastQCFastQC Report
Wed 8 May 2024
EGAF00007962736

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962736
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493047
Total Bases20.2 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA10460.2121501601267222No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG9830.1993724736181338No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8560.17361428018018565No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG8460.17158607597247322No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA7910.16043095283005473No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7650.15515762189000237No Hit
AACTTCGTGCAGGATAGAGGCCTTAGCGGACGGAATGGTAC6610.1340642981297929No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG6390.1296022488728255No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAG6190.1255458404574006No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5290.10729200258798857No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC5050.1024243124894787No Hit
CATGCATTTTGGGCGGCCCAGGGCAACGTCCAGATCAGTGC4980.10100456954407998No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)