FastQCFastQC Report
Wed 8 May 2024
EGAF00007962737

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962737
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493047
Total Bases16.2 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG23570.47804773175782433No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23550.4776420909162818No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG8360.16955787176476078No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC8350.16935505134398954No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC8220.16671838587396332No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG8010.16245915703776717No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT7790.1579971077807998No Hit
ACCACTCCGACGAAAAGCCACTTCGCAAACCTG6740.1367009635998191No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCGCA6510.13203609392208043No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5690.11540481941883837No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT5370.10891456595415853No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)