FastQCFastQC Report
Wed 8 May 2024
EGAF00007962738

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962738
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences523400
Total Bases21.4 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA14280.27283148643484906No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG12520.23920519679021782No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG10490.20042032862055786No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT10270.196217042414979No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG9380.1792128391287734No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA9220.1761559037065342No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG8680.16583874665647688No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT7730.1476881925869316No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG7410.14157432174245319No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC7190.1373710355368743No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7100.13565150936186474No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG6490.12399694306457776No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA6460.1234237676729079No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6360.12151318303400842No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT6260.11960259839510891No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGC6200.1184562476117692No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)