FastQCFastQC Report
Wed 8 May 2024
EGAF00007962739

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007962739
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences523400
Total Bases17.2 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG30470.5821551394726786No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT13970.2669086740542606No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC10190.19468857470385936No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG9230.17634696217042414No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG9130.17443637753152466No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA9060.173098968284295No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC8490.16220863584256784No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT8160.15590370653419947No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC8050.15380206343141No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC7900.15093618647306076No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT7550.1442491402369125No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC7430.14195643867023308No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC6500.1241880015284677No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6460.1234237676729079No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGGTG6280.1199847153228888No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG6260.11960259839510891No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5940.11348872755063048No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT5670.10833014902560184No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5490.10489109667558272No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG5330.10183416125334353No Hit

[OK]Adapter Content

Adapter graph